Rob Knight

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A Conserved Interdomain Microbial Network Underpins Cadaver Decomposition despite Environmental Variables
Paired Microbiome and Metabolome Analyses Associate Bile Acid Changes with Colorectal Cancer Progression
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
Vitamin D Metabolites and the Gut Microbiome in Older Men
Multiple-Disease Detection and Classification across Cohorts via Microbiome Search
Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
Phylogenomics of 10,575 Genomes Reveals Evolutionary Proximity between Domains Bacteria and Archaea
Optimizing Sequencing Protocols for Leaderboard Metagenomics by Combining Long and Short Reads
Best Practices for Analysing Microbiomes
Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2
Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue
Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems
A Gut Microbiome Signature for Cirrhosis Due to Nonalcoholic Fatty Liver Disease
Calour: An Interactive, Microbe-Centric Analysis Tool
Striped UniFrac: Enabling Microbiome Analysis at Unprecedented Scale
Microbiome Tools for Forensic Science
Microbial Effects of Livestock Manure Fertilization on Freshwater Aquaculture Ponds Rearing Tilapia (Oreochromis Shiranus) and North African Catfish (Clarias Gariepinus)
Antibiotic-Induced Microbiome Depletion Alters Metabolic Homeostasis by Affecting Gut Signaling and Colonic Metabolism
Taxon-Specific Aerosolization of Bacteria and Viruses in an Experimental Ocean-Atmosphere Mesocosm
American Gut: An Open Platform for Citizen Science Microbiome Research
Exposure to Toxic Metals Triggers Unique Responses from the Rat Gut Microbiota
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction
Microbiome Data Accurately Predicts the Postmortem Interval Using Random Forest Regression Models
A Communal Catalogue Reveals Earth's Multiscale Microbial Diversity
Guiding Longitudinal Sampling in IBD Cohorts
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Normalization and Microbial Differential Abundance Strategies Depend upon Data Characteristics
Lifestyle Chemistries from Phones for Individual Profiling
Tiny Microbes, Enormous Impacts: What Matters in Gut Microbiome Studies?
Microbiome-Wide Association Studies Link Dynamic Microbial Consortia to Disease
Correlation Detection Strategies in Microbial Data Sets Vary Widely in Sensitivity and Precision
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Microbial Community Assembly and Metabolic Function during Mammalian Corpse Decomposition
Open-Source Sequence Clustering Methods Improve the State Of the Art
Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project
Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota
Subsistence Strategies in Traditional Societies Distinguish Gut Microbiomes
Ribosomal RNA, the Lens into Life
Dietary Effects on Human Gut Microbiome Diversity
Meta-Analyses of Human Gut Microbes Associated with Obesity and IBD
Which Is More Important for Classifying Microbial Communities: Who's There or What They Can Do?
Structural Basis for Diversity in the SAM Clan of Riboswitches
Advancing Our Understanding of the Human Microbiome Using QIIME